Bioconductor BioC2018

Showing : BioC2018 • reset

votes

replies

730

views

bioc2018 News

5.9 years ago Martin Morgan 25k

votes

807

views

BioC2018 News

6.0 years ago Martin Morgan 25k

votes

replies

1.1k

views

conference BioC2018

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by Jenny Drnevich ★ 2.0k

votes

663

views

bioc2018

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by dberel ▴ 20

votes

replies

641

views

bioc2018

6.1 years ago dberel ▴ 20

votes

replies

823

views

bioc2018 News

6.2 years ago Levi Waldron ★ 1.1k

vote

replies

840

views

BioC2018

6.3 years ago destiny_mullens • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k

The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by nbay13 • 0

A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Votes

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Awards • All

Popular Question to Gyan Prakash Mishra ▴ 10