Bioconductor BioNERO

Showing : BioNERO • reset

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488

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GRN BioNERO

updated 14 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by majeedaasim • 0

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901

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BioNERO

updated 18 months ago by Fabricio Almeida-Silva ▴ 40 • written 18 months ago by Biologist • 0

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408

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#BioNERO BioNERO Cystoscope

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 13 months ago by Hasani • 0

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730

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BioNERO Pviz

16 months ago • updated 14 months ago zxd95 • 0

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450

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BioNERO

8 months ago matevz.likar • 0

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211

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plot_expression_profile BioNERO

6 months ago Christopher • 0

6 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

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Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k