Bioconductor BiocSingular

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BiocSingular zellkonverter batchelor

updated 2.9 years ago by luke.zappia ▴ 50 • written 2.9 years ago by jma1991 ▴ 70

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scater BiocSingular DelayedArray

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by kevin.rue ▴ 320

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Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k

What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]

Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k

Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

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Comment: Ensembl down???

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