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Comment: Too many significant genes when integrating gtex and tcga
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Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first.
Also take a st…
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See `?results`, in particular the lfcThreshold argument.
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You already ran a temporal assay. Now you can compare each time point to the baseline.
The interaction term is only applicable if you have…
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