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CellCODE
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cell analysis- significance output perturbed in shiny environment
cellcode
significance
7.9 years ago
christopher.clarskon15
▴ 20
1
vote
1
reply
1.9k
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CellMix compare results to CellCODE
cellmix
cellcode
updated 7.9 years ago by
Steve Lianoglou
★ 13k • written 7.9 years ago by
christopher.clarskon15
▴ 20
1
vote
1
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1.3k
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reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 8.0 years ago by
Andrzej Oleś
▴ 750 • written 8.0 years ago by
christopher.clarskon15
▴ 20
1
vote
1
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1.4k
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CellCODE estimate cell proportions SPV analysis grouping comparisons faulty
CellCODE
differential gene expression
8.0 years ago
christopher.clarskon15
▴ 20
4 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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