Bioconductor Significance

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deseq2 betaPrior shrinkage significance

7.8 years ago brynedal ▴ 40

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2.7k

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dna methylation illimina 450k methylation beta M significance

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by skids121 • 0

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1.5k

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limma edger significance rnaseq

updated 9.0 years ago by Gordon Smyth 53k • written 9.0 years ago by roberto.spreafico ▴ 10

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2.0k

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salmon transcripts significance counts

9.6 years ago Assa Yeroslaviz ★ 1.5k

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3.3k

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deseq2 wald lrt genes significance

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by aziza ▴ 20

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1.2k

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cellcode significance

9.8 years ago christopher.clarskon15 ▴ 20

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Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0

Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…

Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20

Thanks both for this useful information.

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Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?

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