Bioconductor Significance

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deseq2 betaPrior shrinkage significance

7.0 years ago brynedal ▴ 40

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2.3k

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dna methylation illimina 450k methylation beta M significance

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by skids121 • 0

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1.3k

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limma edger significance rnaseq

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by roberto.spreafico ▴ 20

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1.7k

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salmon transcripts significance counts

8.8 years ago Assa Yeroslaviz ★ 1.5k

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3.0k

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deseq2 wald lrt genes significance

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by aziza ▴ 20

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1.1k

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cellcode significance

9.0 years ago christopher.clarskon15 ▴ 20

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Answer: WGCNA coupled with differential expression analysis: question about baseline mod by phylliskeller162 • 0

My reflexes are challenged every time I play [Dinosaur Game][1]! [1]: https://dinosaur-game.io

Answer: blockwiseModule crashes in the end and doesn't generate modules by phylliskeller162 • 0

Crave adrenaline, music, and pixel-perfect jumps? [Geometry Dash][1] delivers it all in one pulse-pounding ride! [1]: https://geomet…

Comment: How to extract coordinates of mismatches from a BAM file lodaded in as a GAlignm by Charles • 0

I am trying this but it is slow. ``` aln2mismatches <- function (gal) { gr <- GRanges(gal) irl <- cigarRangesAlongReferenceSpace(cigar…

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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