Bioconductor ChAMP

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Cha ChAMP

updated 5 days ago by James W. MacDonald 66k • written 15 days ago by e1271094 • 0

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ChAMP

updated 12 days ago by shepherl 3.9k • written 12 days ago by Galia • 0

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Bioconductor ChAMP

updated 1 day ago by ATpoint ★ 4.2k • written 1 day ago by Macsue • 0

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Answer: Counter-directional LFC shrinkage by Michael Love 42k

It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.

Comment: Error in gseDO function by Javier • 0

Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0

Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…

Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30

Two years on and the issue is still there. Thank you Arthur for the solution!

Comment: Cannot install oligo on Fedora by mbassal • 0

so whats the solution for this error?

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Answer: Error in gseDO function

DiffBind Batch Effect

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