Bioconductor ChIPSeq

Showing : ChIPSeq • reset

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101

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chipseq

updated 10 days ago by James W. MacDonald 65k • written 10 days ago by zhulin • 0

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153

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ChIPSeq annotation ChIPpeakAnno

11 weeks ago nilanjanamani88 • 0

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377

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chipseq DifferentialMethylation DESeq2

updated 12 weeks ago by Michael Love 41k • written 3 months ago by rebw25 • 0

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168

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bSubControl ChIPSeq DiffBind

3 months ago frueher • 0

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322

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csaw ChIPseq DiffBind

5 months ago jared.andrews07 ▴ 30

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439

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DiffBind chipseq

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by lin.pei26 • 0

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276

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ChIPpeakAnno ChIPSeq MotifDiscovery

7 months ago franciscrick41 • 0

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1.1k

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ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

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3.0k

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DiffBind chipseq

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by ANAMIKA • 0

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998

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ChIPSeq DiffBind

updated 10 months ago by Rory Stark ★ 5.2k • written 11 months ago by lin.pei26 • 0

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1.1k

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diffbind chipseq

updated 11 months ago by lin.pei26 • 0 • written 4.7 years ago by danielaperry2015 • 0

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1.8k

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DiffBind R chipseq

updated 4 months ago by Rory Stark ★ 5.2k • written 6.6 years ago by kyliecode • 0

12 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length