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Comment: Timecourse RNASeq analysis
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Aurora
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I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
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But.. How to run a temporal assay?
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kcarey
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Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
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Gordon Smyth
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Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/
If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
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Gordon Smyth
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Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
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