Bioconductor CopyNumberVariation

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conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 11 weeks ago by James W. MacDonald 68k • written 11 weeks ago by luca.mangherini • 0

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conumee CopyNumberVariation MethylationArrayData

11 weeks ago Adam • 0

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Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

thank you for your reply. I'm sorry if the question is off topic. the analysis and relative construction of the heatmap was done using bioc…

Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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Scholar to James W. MacDonald 68k