0
votes
0
replies
115
views
0
votes
2
replies
883
views
written 3.9 years ago by
joannew
•
0
0
votes
3
replies
690
views
updated 9 months ago by
Erik Wright
▴
150
•
written 10 months ago by
Till
▴
30
3
votes
5
replies
1.7k
views
updated 11 months ago by
Ling-Hsiu
▴
10
•
written 14 months ago by
julieta.micorriza
•
0
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴
10
Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Awards
• All
Locations
• All
France, 3 minutes ago
United States, 15 minutes ago
Sweden, 18 minutes ago
United States, 19 minutes ago
The Netherlands, 27 minutes ago
France, 3 minutes ago
United States, 15 minutes ago
Sweden, 18 minutes ago
United States, 19 minutes ago
The Netherlands, 27 minutes ago
Traffic: 1130 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6