Showing : FASTA • reset
0
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2
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1.1k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 4.5 years ago by • 0
0
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0
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768
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
3.1 years ago HELEN • 0
0
votes
4
replies
3.7k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.3 years ago HELEN • 0
1
vote
0
replies
954
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS mutation variant fasta
3.3 years ago Endre Sebestyén ▴ 70
0
votes
1
reply
850
views
How to get similarity score between two genomes of different species
fasta multi-species
4.2 years ago drew.neely • 0
0
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0
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855
views
Working with fasta files in sangerseqR
Fasta Ab1 Abif Scf
4.2 years ago dh.heredero ▴ 10
6
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8
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3.3k
views
Ranges from a fasta file
biostrings fasta genomicranges granges
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 80
3
votes
3
replies
1.6k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 5.9 years ago by ★ 11k • written 5.9 years ago by ▴ 120
0
votes
2
replies
5.8k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.9 years ago by 67k • written 5.9 years ago by • 0
0
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0
replies
1.0k
views
Quantifying reporter expression to validate sequencing
alignment Fastq fasta
6.1 years ago A ▴ 40
0
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16
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4.8k
views
Error while using buildindex for human genome
rsubread buildindex fasta alignment
6.1 years ago writetoroopali • 0
0
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0
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1.7k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 6.2 years ago by 25k • written 6.2 years ago by • 0
0
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0
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1.3k
views
filter and trim large fasta/bam files
deep sequencing fasta bam trim
7.2 years ago achaillon • 0
2
votes
3
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2.4k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart fasta
updated 7.2 years ago by 67k • written 7.2 years ago by • 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 7.5 years ago by • 0 • written 7.9 years ago by ▴ 50
2
votes
4
replies
1.5k
views
convert a sequence to Ranges object
iranges fasta split
updated 7.8 years ago by ★ 11k • written 7.8 years ago by ★ 1.5k
1
vote
2
replies
3.3k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings fasta R Call2
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
1
vote
2
replies
2.5k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings fasta protein
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
0
votes
5
replies
1.6k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges biostrings fasta protein readaastringset
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ★ 1.5k
2
votes
1
reply
1.7k
views
export BSgenome directly in gzipped fasta
bsgenome gzip fasta
updated 8.7 years ago by ▴ 90 • written 8.7 years ago by ▴ 80
0
votes
5
replies
3.2k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.8 years ago • updated 7 months ago Henrik Bengtsson ★ 2.4k
0
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1
reply
1.6k
views
vmatchpattern with indexed fasta files
fasta fai vmatchpattern biostrings
updated 8.9 years ago by 16k • written 9.1 years ago by • 0
4
votes
3
replies
4.1k
views
a package for read.fasta
seqinr fasta
updated 9.3 years ago by 16k • written 9.3 years ago by ▴ 40
2
votes
0
replies
3.7k
views
News: Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub Gencode GFF3 FASTA News
9.3 years ago Sonali Arora ▴ 390
2
votes
4
replies
2.1k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 9.4 years ago by ▴ 50 • written 9.4 years ago by • 0
2
votes
2
replies
2.0k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
10.1 years ago b.stielow • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Awards • All
Scholar to Aaron Lun ★ 28k
Teacher to Michael Love 43k
Popular Question to Dario Strbenac ★ 1.5k
Scholar to ATpoint ★ 4.6k
Popular Question to Gordon Smyth 52k
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