Showing : DECIPHER • reset
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ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 4 days ago by ▴ 150 • written 4 days ago by • 0
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5
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341
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 15 days ago by ▴ 10 • written 16 months ago by • 0
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5
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168
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DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 4 weeks ago by ▴ 150 • written 5 weeks ago by • 0
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79
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
10 weeks ago anrongloh • 0
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1
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99
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3 months ago by ▴ 150 • written 4 months ago by • 0
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5
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339
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Program not properly installed/program not accessible by system
R decipher
updated 12 weeks ago by ▴ 150 • written 14 months ago by • 0
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79
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DECIPHER Probe Design Questions
DECIPHER
7 months ago henry1995910343 • 0
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2
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130
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insufficient alignment
DECIPHER Alignment
7 months ago julius_vn • 0
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3
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205
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 9 months ago by ▴ 260 • written 9 months ago by • 0
1
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6
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396
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
9 months ago sebastian.mynott • 0
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1
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115
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
12 months ago joannew • 0
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2
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177
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how to design probes using decipher
R decipher
13 months ago hoonhuiyi • 0
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5
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704
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 14 months ago by 2.7k • written 14 months ago by • 0
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21
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537
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How to use DECIPHER to design group-specific primers
Decipher
14 months ago hoonhuiyi • 0
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1
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124
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 17 months ago by ▴ 150 • written 17 months ago by ▴ 10
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1
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148
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PCR simulation with PNAs
PCR DECIPHER PNA
20 months ago marissaruthlee • 0
1
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2
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270
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Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 21 months ago by ▴ 150 • written 21 months ago by • 0
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0
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178
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Alignment larger than the maximum allowable size
DECIPHER
updated 23 months ago by 2.7k • written 23 months ago by • 0
2
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4
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475
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How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
3.1 years ago reubenmcgregor88 • 0
2
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2
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707
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How to combine sequences from different stringsets?
biostrings decipher
updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
1
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3
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511
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Transform index to chromosome in DECIPHER package
decipher
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by ▴ 40
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7
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623
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 3.4 years ago by ▴ 150 • written 3.4 years ago by • 0
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2
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459
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
3.4 years ago reubenmcgregor88 • 0
2
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5
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644
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Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 3.5 years ago by ▴ 150 • written 3.5 years ago by • 0
2
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3
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717
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Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 3.5 years ago by ▴ 150 • written 3.5 years ago by • 0
0
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1
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572
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 3.7 years ago by ▴ 10 • written 3.7 years ago by • 0
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1
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839
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
3.7 years ago c.l.frankling • 0
2
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5
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883
views
Multiple Sequence Alignment using DNA sequence
msa decipher
4.1 years ago bbista91 ▴ 10
1
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5
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751
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DECIPHER version bug using biocLite()
DECIPHER
5.0 years ago Vinicius Henrique da Silva ▴ 40
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1
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530
views
Possible bug in ConsensusSequence
DECIPHER
updated 5.1 years ago by ▴ 10 • written 5.1 years ago by • 0
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3
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1.7k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 5.4 years ago by ▴ 20 • written 18.2 years ago by ▴ 220
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0
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1.0k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
7.3 years ago Kathi Zarnack ▴ 110
0
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1
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628
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 10.9 years ago by ★ 7.2k • written 10.9 years ago by ▴ 40
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1
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1.2k
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boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 30
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0
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673
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
11.0 years ago Dick Beyer ★ 1.4k
0
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0
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838
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
11.2 years ago Radek Blatny ▴ 60
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1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
12.0 years ago Joern Toedling ▴ 450
0
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4
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691
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help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 15.0 years ago by ★ 7.4k • written 15.0 years ago by ▴ 890
38 results • Page 1 of 1
Recent ...
Replies
Comment: Data input for aracne2regulon function in viper package by Keith Hughitt ▴ 130
Hi, I'm afraid not, so I don't think I can be much help, unfortunately. In the past, the authors of ARACNe-AP were generally quite responsi…
Comment: Data input for aracne2regulon function in viper package by Luna_P • 0
Hello Keith, I am currently trying to use my ARACNE-AP generated networks in Viper. I did all three steps you mentioned above but my prob…
Answer: DESeq2 for allele-specific expression with contrasts between conditions by Michael Love 33k
There is a section in the vignette on interactions that will help you here. You want to test for within-individual effects (`allele`) and c…
Answer: Issues with Tximport by Michael Love 33k
Your file has no version numbers, while your `tx2gene` does have version numbers. While the names look similar, they are not a match. tximp…
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w by Michael Love 33k
This is fine and ignorable, it is coming from upstream packages: our use of a TxDb object to pull out transcript to gene mappings.
Votes
Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
simultaneous use of robust and weighting methods in limma
simultaneous use of robust and weighting methods in limma
Answer: RUVSeq and Salmon
Awards • All
Popular Question to Keith Hughitt ▴ 130
Scholar to Aaron Lun ★ 26k
Teacher to Martin Morgan 25k
Teacher to alexvpickering ▴ 110
Popular Question to k.vitting.seerup ▴ 100
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