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Answer: Extract Limma Adjusted Values for Plotting
by
James W. MacDonald
63k
You should use `removeBatchEffect` for that.
Comment: Interpret plot from DiffBind
by
Chris
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Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …
Comment: Use with_go along with other filters in getBM function
by
RuBBiT0
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Thank you! I think that makes much sense to me.
Comment: Interpret plot from DiffBind
by
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Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Comment: Interpret plot from DiffBind
by
Chris
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Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?
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