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DESEq
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0
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873
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get full variance per gene from DESeq
DESeq
DESeq
15.2 years ago
Graham Thomas
▴ 20
0
votes
1
reply
1.6k
views
DESeq question correlation
DESeq
DESeq
updated 15.2 years ago by
Naomi Altman
★ 6.0k • written 15.2 years ago by
Pete Shepard
▴ 240
0
votes
0
replies
1.2k
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
15.2 years ago
sunghee OH
▴ 50
0
votes
1
reply
1.3k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 15.2 years ago by
Simon Anders
★ 3.8k • written 15.2 years ago by
sunghee OH
▴ 50
0
votes
1
reply
1.5k
views
Problem for install DESeq
DESeq
DESeq
updated 15.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.2 years ago by
Jinyan Huang
▴ 190
0
votes
2
replies
1.2k
views
error in nbinomTest from package DESeq
DESeq
DESeq
15.3 years ago
Andreia Fonseca
▴ 810
0
votes
1
reply
979
views
error in nbinomTest from package DESeq
DESeq
DESeq
updated 15.3 years ago by
Wolfgang Huber
★ 13k • written 15.3 years ago by
Andreia Fonseca
▴ 810
0
votes
13
replies
4.2k
views
DESeq and number of replicates required for RNA-Seq
GO
DESeq
GO
DESeq
updated 15.3 years ago by
Naomi Altman
★ 6.0k • written 15.3 years ago by
michael watson IAH-C
★ 3.4k
0
votes
8
replies
2.8k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 15.4 years ago by
Naomi Altman
★ 6.0k • written 15.4 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.4k
views
analysis of differential expression of small RNAs sequences
RNASeq
DESeq
RNASeq
DESeq
updated 15.5 years ago by
Simon Anders
★ 3.8k • written 15.5 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.2k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.5 years ago
Simon Anders
★ 3.8k
0
votes
0
replies
1.2k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.5 years ago
Jinfeng Liu
▴ 10
512 results • Page
11 of 11
Recent ...
Replies
Comment: Heat Map
by
97shandie
• 0
Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Results with PON give more variants
by
ejafgdf4.ge.r.m
• 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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