Bioconductor DESe

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DESeq2 lfcshrink DESe

updated 12 months ago by Michael Love 42k • written 12 months ago by Alina • 0

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DESeq2 Dese

updated 6 weeks ago by Michael Love 42k • written 6 weeks ago by Léa • 0

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Dese DESeq2

11 months ago Asger Mølgaard • 0

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DESe DESeq2

9 months ago Adèle • 0

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dese DESeq2

3 months ago pl23 • 0

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DESeq2 Dese DifferentialRegulation differe

updated 7 weeks ago by feather-W • 0 • written 13 months ago by Bernardo ▴ 10

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dese DESeq2

4 months ago Hugo • 0

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DESeq2 dese

updated 11 weeks ago by ATpoint ★ 4.1k • written 11 weeks ago by Xu • 0

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Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k

The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

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Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

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Popular Question to Gyan Prakash Mishra ▴ 10