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DESe
•
reset
2
votes
2
replies
968
views
Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
18 months ago
BioinfGuru
▴ 70
0
votes
1
reply
644
views
collapseReplicates dimension error
DESeq2
Dese
updated 23 months ago by
Michael Love
43k • written 23 months ago by
Léa
• 0
0
votes
3
replies
810
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 2.0 years ago by
Xu
• 0
0
votes
2
replies
933
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
2.1 years ago
pl23
• 0
0
votes
2
replies
1.2k
views
Linear Model Fitting and Colinearity
dese
DESeq2
2.2 years ago
Hugo
• 0
0
votes
5
replies
1.5k
views
DESeq2 analysis
DESe
DESeq2
2.6 years ago
Adèle
• 0
0
votes
2
replies
2.4k
views
Handling NA's in Deseq2
Dese
DESeq2
2.7 years ago
Asger Mølgaard
• 0
2
votes
17
replies
3.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 2.8 years ago by
Michael Love
43k • written 2.8 years ago by
Alina
• 0
4
votes
5
replies
2.4k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 20 months ago by
ij283
• 0 • written 2.9 years ago by
Bernardo
▴ 10
3
votes
3
replies
1.4k
views
Merging two plated in R
dese
DESeq2
updated 3.8 years ago by
James W. MacDonald
68k • written 3.8 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.8k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 3.8 years ago by
Basti
▴ 780 • written 3.8 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
2.2k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
4.1 years ago
aedavids
▴ 20
0
votes
2
replies
1.3k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
4.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
989
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
Dinesh
• 0
2
votes
3
replies
1.5k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
glennli
• 0
0
votes
2
replies
1.5k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 5.2 years ago by
Michael Love
43k • written 5.3 years ago by
hpapoli
• 0
16 results • Page
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Replies
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
Robert Castelo
★ 3.4k
Hi, the package you refer to is not called `SNPlocs.HSapiens.dbSNP155.GRCh38`, but `SNPlocs.Hsapiens.dbSNP155.GRCh38`, note the lowercase l…
Votes
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Comment: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
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chirag.parsania
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