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dese
•
reset
2
votes
2
replies
968
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
RUVSeq
DESeq2
dese
18 months ago
BioinfGuru
▴ 70
0
votes
1
reply
642
views
collapseReplicates dimension error
DESeq2
Dese
updated 23 months ago by
Michael Love
43k • written 23 months ago by
Léa
• 0
0
votes
3
replies
810
views
DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2
dese
written 2.0 years ago by
Xu
• 0
0
votes
2
replies
932
views
Cross-species analysis using DESeq2 - size factor computation
dese
DESeq2
2.1 years ago
pl23
• 0
0
votes
2
replies
1.2k
views
Linear Model Fitting and Colinearity
dese
DESeq2
2.2 years ago
Hugo
• 0
0
votes
5
replies
1.5k
views
DESeq2 analysis
DESe
DESeq2
2.6 years ago
Adèle
• 0
0
votes
2
replies
2.4k
views
Handling NA's in Deseq2
Dese
DESeq2
2.7 years ago
Asger Mølgaard
• 0
2
votes
17
replies
3.6k
views
lfcshrink error DESeq2
DESeq2
lfcshrink
DESe
updated 2.8 years ago by
Michael Love
43k • written 2.8 years ago by
Alina
• 0
4
votes
5
replies
2.4k
views
Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2
Dese
DifferentialRegulation
differe
updated 20 months ago by
ij283
• 0 • written 2.9 years ago by
Bernardo
▴ 10
3
votes
3
replies
1.4k
views
Merging two plated in R
dese
DESeq2
updated 3.8 years ago by
James W. MacDonald
68k • written 3.8 years ago by
lmrogers34
▴ 10
0
votes
5
replies
4.8k
views
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE
DESeq2
updated 3.8 years ago by
Basti
▴ 780 • written 3.8 years ago by
Maryam.sed1400
• 0
1
vote
3
replies
2.2k
views
ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2
dese
4.1 years ago
aedavids
▴ 20
0
votes
2
replies
1.3k
views
DESeq2 ratio of ratios and p-value
DESeq2
dese
4.3 years ago
wilfried.guiblet
• 0
0
votes
2
replies
989
views
where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
Dinesh
• 0
2
votes
3
replies
1.5k
views
Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2
DESe
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
glennli
• 0
0
votes
2
replies
1.5k
views
Effect of within-group variation on gene expression analysis
DESeq2
updated 5.2 years ago by
Michael Love
43k • written 5.3 years ago by
hpapoli
• 0
16 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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