Bioconductor DESeq2

Showing : DESeq2 • reset

0

votes

5

replies

107

views

DESeq2 design coldata

updated 1 hour ago by James W. MacDonald 65k • written 17 hours ago by arfranco ▴ 130

0

votes

2

replies

59

views

DESeq2

updated 22 hours ago by Michael Love 41k • written 22 hours ago by Espresso • 0

0

votes

2

replies

89

views

DESeq2

1 day ago • updated 15 hours ago kcarey • 0

0

votes

2

replies

99

views

DESeq2 ImpulseDE2 timecour timecoursedata moanin

3 days ago • updated 5 hours ago Aurora • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

Awards • All