Bioconductor DESeq2

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DESeq2

18 hours ago boczniak767 ▴ 720

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DESeq2

updated 11 hours ago by swbarnes2 ★ 1.4k • written 22 hours ago by ennui • 0

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113

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Seurat DESeq2 single-cell scRNA Pseudobulk

updated 1 day ago by Guido Hooiveld ★ 4.0k • written 3 days ago by Sara • 0

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142

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DESeq2 GSVA ssGSEA

updated 2 days ago by Robert Castelo ★ 3.3k • written 4 days ago by michelafrancesconi8 • 0

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113

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DESeq2 clinicaltraits Normalization batchnormalisation

5 days ago • updated 2 days ago sukeshinik5 • 0

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240

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DESeq2

updated 3 days ago by ATpoint ★ 4.2k • written 5 days ago by tjl • 0

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199

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DESeq2 ggplot2

6 days ago boczniak767 ▴ 720

7 results • Page 1 of 1

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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k

The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …

Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k

Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…

Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k

I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…

Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k

Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.

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A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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Popular Question to Dario Strbenac ★ 1.5k