Biostar DEseq

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DESeq

updated 10 days ago by Michael Love 39k • written 12 days ago by m-bihie ▴ 10

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DESeq2 Transcriptomics tximport deseq txi

updated 21 days ago by Dario Strbenac ★ 1.5k • written 22 days ago by Hicham • 0

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Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0

Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40

Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k

Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…

Comment: Atena package - error (new user) by lalanis1 • 0

Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani

Comment: Nested paired design with covariates in limma by Gordon Smyth 47k

Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…

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C: Can't install TopmedPipeline Package

Comment: Question about GWASTools gdsSubset

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