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Comment: Uniform window size for different genes
by
rbenel
▴
20
Thanks, I'll keep working on it because the `png("two_transcripts.ong", 240)` still looks a bit weird...
thanks though!
Comment: DTU using DEXSeq (time series data with condition factor)
by
Alejandro Reyes
★
1.8k
Apologies for late reply, Nirad. You probably figured it out by now. In the formulae, the 'exon' term would take the baseline transcript us…
Comment: DEXSeq prepare annotation script throws "object has no attribute 'next'" for Ens
by
Alejandro Reyes
★
1.8k
Apologies for late reply. Could you share the link to the gtf source?
Answer: Normalizing exonic reads and then log transforming or variance stabilising
by
Alejandro Reyes
★
1.8k
Hello. Short answer is yes, count-level transoformation for variance stabilization also work for exon-count level matrices.
Comment: A mistake came when I install some packages using "biocmanager"
by
f1014063507
•
0
Thanks for answering.
In fact, I can use the computer to install packages by "install.packages()", but the "biocmanager::install()" doesn'…
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