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DNAcopy
•
reset
0
votes
0
replies
1.4k
views
cghMCR package - Jianhua Zhang
DNAcopy
cghMCR
DNAcopy
cghMCR
16.0 years ago
Luz G Alonso
▴ 20
0
votes
0
replies
1.4k
views
DNAcopy segments.p function / Scoring CNVs
affy
DNAcopy
affy
DNAcopy
17.4 years ago
marco zucchelli
▴ 320
0
votes
2
replies
1.5k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH
SNP
Cancer
DNAcopy
aCGH
aCGH
SNP
Cancer
DNAcopy
aCGH
updated 17.6 years ago by
Henrik Bengtsson
★ 2.4k • written 17.6 years ago by
Daniel Brewer
★ 1.9k
0
votes
3
replies
1.8k
views
CGH DNAcopy plot multiple samples on one plot
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.2 years ago by
Gavin Kelly
▴ 50 • written 18.2 years ago by
Daniel Brewer
★ 1.9k
0
votes
8
replies
2.8k
views
segmentation aCGH data
Normalization
CGH
probe
limma
DNAcopy
snapCGH
Normalization
CGH
probe
limma
DNAcopy
18.3 years ago
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
4
replies
2.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 18.3 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 18.3 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
2
replies
1.6k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 18.3 years ago by
J-C. Marioni
▴ 40 • written 18.3 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
1
reply
1.5k
views
DNAcopy package, craeting CNA object
CGH
marray
DNAcopy
CGH
marray
DNAcopy
updated 18.4 years ago by
Sean Davis
21k • written 18.4 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
1
reply
1.6k
views
DNAcopy plot just one sample
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.5 years ago by
Martin Morgan
25k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.0k
views
how to get fewer cut points with DNAcopy or GLAD
SNP
affy
DNAcopy
GLAD
SNP
affy
DNAcopy
GLAD
18.5 years ago
Wittner, Ben
▴ 290
0
votes
4
replies
1.7k
views
Removing libraries or using a particular function
Cancer
DNAcopy
Cancer
DNAcopy
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
1.2k
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
18.6 years ago
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.2k
views
cghMCR bug?
Cancer
DNAcopy
cghMCR
Cancer
DNAcopy
cghMCR
updated 19.0 years ago by
John Zhang
★ 2.9k • written 19.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
0
replies
1.3k
views
Detecting overrepresented genomic loci
aCGH
Clustering
CGH
geneplotter
DNAcopy
aCGH
GLAD
aCGH
Clustering
CGH
geneplotter
aCGH
20.8 years ago
Yi, Andrew
▴ 20
64 results • Page
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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Thomas Girke
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