Bioconductor DNAcopy

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1.4k

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DNAcopy cghMCR DNAcopy cghMCR

15.9 years ago Luz G Alonso ▴ 20

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1.4k

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affy DNAcopy affy DNAcopy

17.3 years ago marco zucchelli ▴ 320

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1.5k

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aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH

updated 17.5 years ago by Henrik Bengtsson ★ 2.4k • written 17.5 years ago by Daniel Brewer ★ 1.9k

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1.7k

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Cancer DNAcopy Cancer DNAcopy

updated 18.1 years ago by Gavin Kelly ▴ 50 • written 18.1 years ago by Daniel Brewer ★ 1.9k

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2.7k

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Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy

18.2 years ago jhs1jjm@leeds.ac.uk ▴ 230

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1.9k

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aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH

updated 18.2 years ago by jhs1jjm@leeds.ac.uk ▴ 230 • written 18.2 years ago by caiwei@mdanderson.org ▴ 110

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1.6k

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aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH

updated 18.2 years ago by J-C. Marioni ▴ 40 • written 18.2 years ago by caiwei@mdanderson.org ▴ 110

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1.4k

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CGH marray DNAcopy CGH marray DNAcopy

updated 18.2 years ago by Sean Davis 21k • written 18.2 years ago by jhs1jjm@leeds.ac.uk ▴ 230

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1.6k

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Cancer DNAcopy Cancer DNAcopy

updated 18.3 years ago by Martin Morgan 25k • written 18.3 years ago by Daniel Brewer ★ 1.9k

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995

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SNP affy DNAcopy GLAD SNP affy DNAcopy GLAD

18.3 years ago Wittner, Ben ▴ 290

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1.7k

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Cancer DNAcopy Cancer DNAcopy

updated 18.4 years ago by Seth Falcon ★ 7.4k • written 18.4 years ago by Daniel Brewer ★ 1.9k

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1.2k

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Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR

18.4 years ago Daniel Brewer ★ 1.9k

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1.2k

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Cancer DNAcopy cghMCR Cancer DNAcopy cghMCR

updated 18.9 years ago by John Zhang ★ 2.9k • written 18.9 years ago by Ramon Diaz ★ 1.1k

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1.3k

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aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH

20.7 years ago Yi, Andrew ▴ 20

64 results • Page 2 of 2

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130