Bioconductor Gene network

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microarray gene network WGCNA

updated 6.1 years ago by Bioconductor Community 0 • written 6.1 years ago by GENOMIC_region • 0

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PSICQUIC gene network

updated 7.4 years ago by Paul Shannon ▴ 470 • written 7.4 years ago by badredda • 0

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job computational biology simulation evolution Gene network Job

7.5 years ago isaac.salazar • 0

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Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

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Answer: Unable to install nloptr

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