Bioconductor GeneRFold

Showing : GeneRFold • reset

0

votes

1

reply

982

views

GeneRFold GeneR

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by vinod.acear ▴ 50

0

votes

1

reply

847

views

BSgenome BSgenome GeneRfold BSgenome BSgenome GeneRfold

updated 13.6 years ago by Heidi Dvinge ★ 2.0k • written 13.6 years ago by Yuan Jian ▴ 250

4

votes

5

replies

807

views

GeneRfold software error

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by nils.hassel • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…

Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k

There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.

Answer: Timecourse RNASeq analysis by Michael Love 41k

There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …

Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k

You can either turn off independent filtering in `results` or use `ihw` see the vignette.

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…

Votes

Nominations for Bioconductor Awards 2024!

Awards • All