Bioconductor GenomicFeatures

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GO GenomicFeatures GO GenomicFeatures

updated 7 months ago by Farmwald • 0 • written 12.5 years ago by Guido Hooiveld ★ 4.1k

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

written 2.0 years ago by ramonmassoni ▴ 10

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GenomicFeatures Guitar txdbmaker GenomicRanges

written 8 weeks ago by ferran.llobet.cabau ▴ 10

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TxDb GenomicFeatures GenomeInfoDb

written 12 days ago by dbsgtk • 0

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Answer: Issue loading and downloading Bioconductor 3.22 packages after update by Robert Castelo ★ 3.4k

Hi, the package you refer to is not called `SNPlocs.HSapiens.dbSNP155.GRCh38`, but `SNPlocs.Hsapiens.dbSNP155.GRCh38`, note the lowercase l…

Comment: Issue loading and downloading Bioconductor 3.22 packages after update by ATpoint ★ 5.0k

"Breaks" needs a more detailed explanation, together with code and error messages. Can you confirm it's not just the R download timeout aft…

Comment: Reproducibility of code in various Bioconductor versions by strawberry3 • 0

Thank you for advice! I have updated Bioconductor to the newest one, but now some of my commands don't work anymore, and I cannot download …

Answer: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…

Comment: Question on processing compound protein groups in limpa by JKim • 0

Many thanks. I appreciate your advice.

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Answer: Question on processing compound protein groups in limpa

Answer: Correct usage of limpa for protein input

A: Interpretaion of dendrogram height in WGCNA?

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