Bioconductor GenomicRanges

Showing : GenomicRanges • reset

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genomicranges

written 10.6 years ago by samuel collombet ▴ 140

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GenomicRanges RleList

8 months ago story.benjamin ▴ 20

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plyranges GenomicRanges

updated 10 months ago by Michael Love 43k • written 4.6 years ago by alorsonmethyle • 0

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GenomicRanges tidySummarizedExperiment tidyomics

7 months ago • updated 3 months ago Kateřina • 0

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GenomicRanges CNEr

8 months ago 1324087964 • 0

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262

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GenomicRanges

updated 23 days ago by Kevin Blighe ★ 4.0k • written 3 months ago by Marco • 0

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GenomicRanges GenomicFeatures

14 months ago • updated 12 months ago mat149 ▴ 80

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GenomicRanges plyranges

updated 10 months ago by Michael Love 43k • written 5.2 years ago by r.a.policastro • 0

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GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar

7 months ago pineiroalejandro ▴ 10

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limma probe DMRcate GenomicRanges DifferentialMethylation

7 months ago jamiecatalano2 • 0

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137

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GenomicRanges JobPosting

updated 1 day ago by eja.ger.m • 0 • written 20 days ago by story.benjamin ▴ 20

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k