Showing : GenomicRanges • reset
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fast apply on RleList
GenomicRanges RleList
13 days ago • updated 12 days ago story.benjamin ▴ 20
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1.1k
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Using genomicRanges / plyranges to calculate score of peaks within intervals
plyranges GenomicRanges
updated 11 weeks ago by 43k • written 4.0 years ago by • 0
2
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1
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852
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Having Trouble Using CNE12() and CNE21() in CNEr
GenomicRanges CNEr
15 days ago 1324087964 • 0
3
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3
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566
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ISO a solution to rank-order introns by transcript
GenomicRanges GenomicFeatures
6 months ago • updated 4 months ago mat149 ▴ 80
2
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1
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462
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Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 11 months ago by 43k • written 11 months ago by ▴ 80
1
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1
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1.7k
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Reducing and aggregating GRanges with gaps using plyranges
GenomicRanges plyranges
updated 11 weeks ago by 43k • written 4.5 years ago by • 0
0
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0
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356
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hichip fragments extraction chip seq
ChIPSeqData interact GenomicRanges HiC
8 months ago user_bioinfo • 0
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0
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227
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News: RNAseq data analysis with R/Bioconductor (4-15 November)
DESeq2 GenomicRanges
5 months ago info ▴ 10
8 results • Page 1 of 1
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Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much for the vis suggestion!
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!
Votes
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
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