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GenomicRange
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Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
5 months ago
mat149
▴ 80
0
votes
1
reply
853
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 19 months ago by
James W. MacDonald
66k • written 19 months ago by
hong
• 0
1
vote
11
replies
1.0k
views
Finding genes with loss of Heterozygosity
genomicrange
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
AZ
▴ 30
5
votes
2
replies
598
views
Intersecting two big dataframe
genomicrange
intersect
updated 4.3 years ago by
James W. MacDonald
66k • written 4.3 years ago by
AZ
▴ 30
4 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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