Bioconductor GenomicScores

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txdbmaker GenomicScores phastCons100way.UCSC.hg38 GenomicFeatures

14 months ago rania.alanany • 0

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GenomicScores

updated 3.3 years ago by Robert Castelo ★ 3.4k • written 3.5 years ago by Robert • 0

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GenomicScores MafH5.gnomAD.v3.1.1.GRCh38

updated 3.6 years ago by Robert Castelo ★ 3.4k • written 3.8 years ago by Robert • 0

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GenomicScores

updated 4.3 years ago by Robert Castelo ★ 3.4k • written 4.3 years ago by nattzy94 ▴ 20

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genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer

updated 14 months ago by rania.alanany • 0 • written 5.8 years ago by Biologist ▴ 120

5 results • Page 1 of 1

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Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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