Bioconductor Germline

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PureCN Germline Normal CNV

updated 7.1 years ago by markus.riester ▴ 130 • written 7.1 years ago by twtoal ▴ 10

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PureCN germline SNP

updated 7.4 years ago by kakbrus • 0 • written 7.6 years ago by twtoal ▴ 10

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PureCN indel somatic germline

updated 8.4 years ago by markus.riester ▴ 130 • written 8.4 years ago by pathkim • 0

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Comment: Annotatr Duplicate Entries by edward.esiribloom • 0

did you find a solution? @d3a4b941

Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to edward.esiribloom • 0

Popular Question to Fred Hutch (Recruiting) ▴ 40