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indel
•
reset
2
votes
3
replies
693
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PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 4.9 years ago by
markus.riester
▴ 120 • written 4.9 years ago by
pathkim
• 0
1
vote
2
replies
648
views
Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 5.8 years ago by
Michael Lawrence
11k • written 5.8 years ago by
addyS
• 0
0
votes
1
reply
543
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 5.9 years ago by
Hervé Pagès
15k • written 5.9 years ago by
oliwindram
▴ 10
2
votes
4
replies
1.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 6.9 years ago by
xiaojing.wang
▴ 50 • written 6.9 years ago by
kristenbeck527
• 0
1
vote
0
replies
918
views
Genome editing analysis with Illumina sequencing
indel
sequencing
alignment
7.1 years ago
Merienne Nicolas
▴ 120
2
votes
2
replies
839
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 7.5 years ago by
Wei Shi
★ 3.4k • written 7.5 years ago by
daniel.silvestre
▴ 100
6
votes
11
replies
1.9k
views
Comparing read sequence back to reference sequence
bam
indel
genomicalignments
biostrings
updated 7.5 years ago by
Nathaniel Hayden
▴ 180 • written 7.5 years ago by
Stefanie Tauber
▴ 40
7 results • Page
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Comment: Quantile Normalization after rma or not?
by
Yang Shi
• 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works?
by
gowthamee
• 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways
by
zohreh.fazelan
• 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates
by
Gordon Smyth
45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma
by
Gordon Smyth
45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
Comment: edgeR: the F-statistics changed after removing lowly expressed gene
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