Biostar Indel

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693

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PureCN indel somatic germline

updated 4.9 years ago by markus.riester ▴ 120 • written 4.9 years ago by pathkim • 0

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648

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snv granges genomicranges variantannotation indel

updated 5.8 years ago by Michael Lawrence 11k • written 5.8 years ago by addyS • 0

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543

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pairwisealignment indel

updated 5.9 years ago by Hervé Pagès 15k • written 5.9 years ago by oliwindram ▴ 10

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1.1k

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indel customprodb fasta variantannotation

updated 6.9 years ago by xiaojing.wang ▴ 50 • written 6.9 years ago by kristenbeck527 • 0

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918

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indel sequencing alignment

7.1 years ago Merienne Nicolas ▴ 120

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839

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rnaseq subjunc indel

updated 7.5 years ago by Wei Shi ★ 3.4k • written 7.5 years ago by daniel.silvestre ▴ 100

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1.9k

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bam indel genomicalignments biostrings

updated 7.5 years ago by Nathaniel Hayden ▴ 180 • written 7.5 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Comment: Handling of missing values in limma by Gordon Smyth 45k

limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…

Votes

Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Comment: edgeR: the F-statistics changed after removing lowly expressed gene

Awards • All

Scholar to James W. MacDonald 59k