Bioconductor HPC

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820

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JobPosting AI HPC CuratedAtlasQueryR

18 months ago Stefano Mangiola ▴ 40

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3.2k

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Regression limma STATISITICS HPC

updated 20 months ago by Gordon Smyth 53k • written 21 months ago by Jitendra ▴ 10

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849

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featureCount Rsubread HPC

2.2 years ago kthapa • 0

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4.2k

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HPC R Bioconducter

3.7 years ago Jitendra ▴ 10

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938

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HPC profiling performance

4.2 years ago Jack • 0

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1.9k

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Minfi local installation Centos hpc

updated 7.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.6 years ago by Goku • 0

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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