Showing : HPC • reset
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Job: Postdoc+PhD position: AI large-language models of single-cell data for cancer immunogenomics
JobPosting AI HPC CuratedAtlasQueryR
18 months ago Stefano Mangiola ▴ 40
5
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25
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3.2k
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limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 20 months ago by 53k • written 21 months ago by ▴ 10
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount Rsubread HPC
2.2 years ago kthapa • 0
4
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8
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4.2k
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R package installation error
HPC R Bioconducter
3.7 years ago Jitendra ▴ 10
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940
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Profiling bioconductor packages in a straightforward fashion
HPC profiling performance
4.2 years ago Jack • 0
2
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2
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1.9k
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Problem installing Minfi on Cluster
Minfi local installation Centos hpc
updated 7.7 years ago by ★ 6.5k • written 7.7 years ago by • 0
6 results • Page 1 of 1
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Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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