Bioconductor HTSeqGenie

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HTSeqGenie

20 months ago Maryam.sed1400 • 0

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HTSeqGenie

updated 7.8 years ago by Jens Reeder ▴ 40 • written 7.8 years ago by Thomas Sandmann ▴ 90

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HTSeqGenie

19 months ago Maryam.sed1400 • 0

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HTSeqGenie

14 months ago zh9118 • 0

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HTSeqGenie

7 months ago zh9118 • 0

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HTSeqGenie BAM

updated 23 days ago by James W. MacDonald 65k • written 23 days ago by zh9118 • 0

6 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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