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HTSeqGenie
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HTSeq command option for single-end reads
HTSeqGenie
20 months ago
Maryam.sed1400
• 0
2
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1
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1.2k
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Source of ribosomal RNA sequences to build rrna_genome index for the HTSeqGenie package
HTSeqGenie
updated 7.8 years ago by
Jens Reeder
▴ 40 • written 7.8 years ago by
Thomas Sandmann
▴ 90
1
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1
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463
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HTSeqGenie run error
HTSeqGenie
14 months ago
zh9118
• 0
0
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0
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864
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HISAT2 and HTSEQ command
HTSeqGenie
19 months ago
Maryam.sed1400
• 0
0
votes
1
reply
312
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HTSeqGenie runs very slow
HTSeqGenie
7 months ago
zh9118
• 0
0
votes
1
reply
147
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BAM write error in HTSeqGenie
HTSeqGenie
BAM
updated 24 days ago by
James W. MacDonald
65k • written 24 days ago by
zh9118
• 0
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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