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Histone Chip-Seq
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Recommendation for visualizing ChIP-qPCR data?
R
chip-seq
histone chip-seq
ggbio
4.2 years ago
Ramiro Magno
▴ 100
3
votes
2
replies
825
views
diffbind finding not differential site
diffbind
chipseq
histone chip-seq
differential binding analysis
updated 4.3 years ago by
Rory Stark
★ 4.6k • written 4.3 years ago by
woongjaej
• 0
0
votes
2
replies
846
views
Differential ChIP-seq with csaw: How to normalise counts on repetitive regions (telomers)?
csaw
histone chip-seq
chip-seq
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
gil.hornung
• 0
10
votes
6
replies
3.0k
views
How to select summit size for histone ChiP-Seq in Diffbind
Diffbind
Histone Chip-Seq
Summit size
updated 8 months ago by
Rory Stark
★ 4.6k • written 5.4 years ago by
urjaswita
▴ 40
4 results • Page
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Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
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SuperD
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Have to define 'snp,scan' or 'scan,snp' for my case.
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Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…
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Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…
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ATpoint
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I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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Guido Hooiveld
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