Showing : Diffbind • reset
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102
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
19 days ago jared.andrews07 ▴ 30
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161
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DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 8 weeks ago by 64k • written 8 weeks ago by • 0
2
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4
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983
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DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 7 weeks ago by • 0 • written 8 weeks ago by • 0
2
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2
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262
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DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
8 weeks ago r.murakami • 0
1
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1
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243
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DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind chipseq
updated 9 weeks ago by 64k • written 9 weeks ago by • 0
3
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7
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526
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Genes in open chromatin region
ChIPpeakAnno DiffBind
written 11 weeks ago by • 0
0
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2
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315
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diffbind analyze for wheat
DiffBind
11 weeks ago zgyu12 • 0
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1
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298
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Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
3 months ago Mark • 0
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0
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252
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DiffBind; Error: No sites have activity greater than filter value
DiffBind
3 months ago Mark • 0
1
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2
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345
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DiffBind plot.profile y-axis unit and individual locus value on the heatmap
DiffBind
3 months ago Junsik • 0
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2
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264
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DiffBind error
DiffBind
updated 3 months ago by ★ 5.1k • written 3 months ago by • 0
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2
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483
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DiffBind dropping peaks in ATAC-seq data
DiffBind ATACSeq
updated 4 months ago by ★ 1.6k • written 4 months ago by • 0
1
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1
reply
862
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Help with error DiffBind
DiffBind
updated 4 months ago by ★ 5.1k • written 5 months ago by • 0
0
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1
reply
905
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 4 months ago by ★ 5.1k • written 4 months ago by • 0
0
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5
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1.3k
views
diffbind
DiffBind chipseq
updated 4 months ago by ★ 5.1k • written 4 months ago by • 0
0
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3
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366
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DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 4 months ago by ★ 5.1k • written 4 months ago by • 0
0
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5
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833
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DiffBind handling of replicates and consensus
diffbind
updated 9 weeks ago by ★ 5.1k • written 3.8 years ago by • 0
0
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4
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506
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
4 months ago Theo • 0
1
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2
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445
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DiffBind Using edgeR: TMM Normalisation produces identical results to Library Size normalisation
DiffBind
updated 5 months ago by ★ 5.1k • written 5 months ago by • 0
0
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1
reply
328
views
DiffBind output issues
DiffBind
updated 5 months ago by ★ 5.1k • written 5 months ago by • 0
1
vote
2
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449
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Interpret plots from DiffBind
DiffBind
5 months ago Chris • 0
2
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2
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355
views
Sample sheet file for DiffBind
DiffBind
updated 4 months ago by • 0 • written 5 months ago by • 0
4
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4
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488
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
5 months ago bhandary.8590 • 0
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0
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270
views
Help with error running DiffBind
DiffBind
5 months ago Chris • 0
1
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7
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747
views
Diffbind "No genome detected"
DiffBind
updated 6 days ago by 64k • written 6 months ago by • 0
7
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13
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1.2k
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Interpret plot from DiffBind
DiffBind
updated 5 months ago by ★ 5.1k • written 6 months ago by • 0
0
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0
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239
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Title in dba.plotProfile
DiffBind
6 months ago agata17 • 0
0
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1
reply
370
views
dba.count with pre-defined regions produced only 10% results
DiffBind diffbind
updated 6 months ago by ★ 5.1k • written 6 months ago by ▴ 10
0
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1
reply
406
views
DiffBind dba() in parallel
DiffBind
updated 6 months ago by ★ 5.1k • written 6 months ago by • 0
1
vote
4
replies
641
views
DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-change
ChIPSeq DiffBind
updated 6 months ago by ★ 5.1k • written 6 months ago by • 0
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0
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292
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Fold values in Diffbind
DiffBind
6 months ago bhandary.8590 • 0
2
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3
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566
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Getting different differentially accessible peaks between versions
dba.report DiffBind
written 6 months ago by • 0
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0
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312
views
Help with Diffbind result
DiffBind
6 months ago Chris • 0
3
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4
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1.1k
views
Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric argument to binary operator
DiffBind
7 months ago Mark • 0
0
votes
7
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973
views
DiffBind - question about showing significant difference on peaks with 0 fold change
DiffBind
7 months ago • updated 6 months ago Ti • 0
2
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1
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372
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how diffbind count the reads of each peak in each sample?
diffbind DiffBind
updated 7 months ago by ★ 5.1k • written 7 months ago by • 0
0
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5
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770
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DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 7 months ago by • 0 • written 7 months ago by • 0
4
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6
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677
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind ATACSeq
7 months ago Chris • 0
0
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1
reply
373
views
Plotting read densities from DiffBind results
Read density DiffBind
updated 7 months ago by ★ 5.1k • written 8 months ago by • 0
0
votes
2
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510
views
Question regarding multiple comparisons in DiffBind
DiffBind
8 months ago • updated 7 months ago epipally • 0
8
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13
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1.8k
views
Help with Error in DiffBind
DiffBind ATACSeq
8 months ago Chris • 0
0
votes
2
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592
views
Multiple issues reading in peak sets with Diffbind
DiffBind
updated 8 months ago by ★ 5.1k • written 8 months ago by • 0
0
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2
replies
727
views
DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2 ChIPSeq DiffBind edgeR HistoneModification
8 months ago Giulia • 0
0
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0
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300
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DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2 ChIPSeq DiffBind edgeR HistoneModification
8 months ago Giulia • 0
1
vote
3
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431
views
Using DiffBind Normalization and Contrasting on Fold Change Values
DiffBind
updated 8 months ago by ★ 5.1k • written 8 months ago by • 0
1
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2
replies
405
views
DiffBind spike-in lib.sizes confusion
SpikeIn DiffBind
9 months ago • updated 8 months ago Weisheng • 0
0
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13
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1.1k
views
Does DiffBind make consensus peaks sets for samples from a given condition (e.g. case control)?
dba.analyze DiffBind @rory-stark-5741
8 months ago tahir.msajid • 0
0
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1
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337
views
DiffBind---peak region reads or all reads？
DiffBind
updated 8 months ago by ★ 5.1k • written 9 months ago by • 0
0
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0
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272
views
Can I use default parameter settings of DiffBind to analyze m6A-seq data?
DiffBind MeRIP-seq m6A-seq
9 months ago zhiyi • 0
0
votes
1
reply
538
views
DiffBind differential analysis
DifferentialPeakCalling ChIPanalyser DiffBind chipseqDB
updated 9 months ago by ★ 5.1k • written 9 months ago by • 0
50 results • Page 1 of 1
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Looks good then.
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