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Diffbind
•
reset
0
votes
0
replies
102
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw
ChIPseq
DiffBind
19 days ago
jared.andrews07
▴ 30
0
votes
0
replies
161
views
DiffBind dba.count() crash/can't finish problems
dba.count
DiffBind
ATACSeq
updated 8 weeks ago by
James W. MacDonald
64k • written 8 weeks ago by
sophie.hfliu
• 0
2
votes
4
replies
983
views
DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 7 weeks ago by
Matt Eldridge
• 0 • written 8 weeks ago by
r.murakami
• 0
2
votes
2
replies
262
views
DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
8 weeks ago
r.murakami
• 0
1
vote
1
reply
243
views
DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind
chipseq
updated 9 weeks ago by
James W. MacDonald
64k • written 9 weeks ago by
lin.pei26
• 0
3
votes
7
replies
526
views
Genes in open chromatin region
ChIPpeakAnno
DiffBind
written 11 weeks ago by
Chris
• 0
0
votes
2
replies
315
views
diffbind analyze for wheat
DiffBind
11 weeks ago
zgyu12
• 0
0
votes
1
reply
298
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
3 months ago
Mark
• 0
0
votes
0
replies
252
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
3 months ago
Mark
• 0
1
vote
2
replies
345
views
DiffBind plot.profile y-axis unit and individual locus value on the heatmap
DiffBind
3 months ago
Junsik
• 0
0
votes
2
replies
264
views
DiffBind error
DiffBind
updated 3 months ago by
Rory Stark
★ 5.1k • written 3 months ago by
M.Vukic
• 0
0
votes
2
replies
483
views
DiffBind dropping peaks in ATAC-seq data
DiffBind
ATACSeq
updated 4 months ago by
Malcolm Cook
★ 1.6k • written 4 months ago by
Nebat
• 0
1
vote
1
reply
862
views
Help with error DiffBind
DiffBind
updated 4 months ago by
Rory Stark
★ 5.1k • written 5 months ago by
Chris
• 0
0
votes
1
reply
905
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 4 months ago by
Rory Stark
★ 5.1k • written 4 months ago by
bhandary.8590
• 0
0
votes
5
replies
1.3k
views
diffbind
DiffBind
chipseq
updated 4 months ago by
Rory Stark
★ 5.1k • written 4 months ago by
ANAMIKA
• 0
0
votes
3
replies
366
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config
DiffBind
Error
updated 4 months ago by
Rory Stark
★ 5.1k • written 4 months ago by
jason.kost
• 0
0
votes
5
replies
833
views
DiffBind handling of replicates and consensus
diffbind
updated 9 weeks ago by
Rory Stark
★ 5.1k • written 3.8 years ago by
Jim
• 0
0
votes
4
replies
506
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
4 months ago
Theo
• 0
1
vote
2
replies
445
views
DiffBind Using edgeR: TMM Normalisation produces identical results to Library Size normalisation
DiffBind
updated 5 months ago by
Rory Stark
★ 5.1k • written 5 months ago by
Stevie Pederson
• 0
0
votes
1
reply
328
views
DiffBind output issues
DiffBind
updated 5 months ago by
Rory Stark
★ 5.1k • written 5 months ago by
David.Atkinson2
• 0
1
vote
2
replies
449
views
Interpret plots from DiffBind
DiffBind
5 months ago
Chris
• 0
2
votes
2
replies
355
views
Sample sheet file for DiffBind
DiffBind
updated 4 months ago by
steffies127
• 0 • written 5 months ago by
Chris
• 0
4
votes
4
replies
488
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
5 months ago
bhandary.8590
• 0
0
votes
0
replies
270
views
Help with error running DiffBind
DiffBind
5 months ago
Chris
• 0
1
vote
7
replies
747
views
Diffbind "No genome detected"
DiffBind
updated 6 days ago by
James W. MacDonald
64k • written 6 months ago by
kyliecode
• 0
7
votes
13
replies
1.2k
views
Interpret plot from DiffBind
DiffBind
updated 5 months ago by
Rory Stark
★ 5.1k • written 6 months ago by
Chris
• 0
0
votes
0
replies
239
views
Title in dba.plotProfile
DiffBind
6 months ago
agata17
• 0
0
votes
1
reply
370
views
dba.count with pre-defined regions produced only 10% results
DiffBind
diffbind
updated 6 months ago by
Rory Stark
★ 5.1k • written 6 months ago by
littlefishes20
▴ 10
0
votes
1
reply
406
views
DiffBind dba() in parallel
DiffBind
updated 6 months ago by
Rory Stark
★ 5.1k • written 6 months ago by
Shashank
• 0
1
vote
4
replies
641
views
DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-change
ChIPSeq
DiffBind
updated 6 months ago by
Rory Stark
★ 5.1k • written 6 months ago by
lin.pei26
• 0
0
votes
0
replies
292
views
Fold values in Diffbind
DiffBind
6 months ago
bhandary.8590
• 0
2
votes
3
replies
566
views
Getting different differentially accessible peaks between versions
dba.report
DiffBind
written 6 months ago by
jandrade
• 0
0
votes
0
replies
312
views
Help with Diffbind result
DiffBind
6 months ago
Chris
• 0
3
votes
4
replies
1.1k
views
Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric argument to binary operator
DiffBind
7 months ago
Mark
• 0
0
votes
7
replies
973
views
DiffBind - question about showing significant difference on peaks with 0 fold change
DiffBind
7 months ago • updated 6 months ago
Ti
• 0
2
votes
1
reply
372
views
how diffbind count the reads of each peak in each sample?
diffbind
DiffBind
updated 7 months ago by
Rory Stark
★ 5.1k • written 7 months ago by
hfyuan2016
• 0
0
votes
5
replies
770
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 7 months ago by
householdelsewhere
• 0 • written 7 months ago by
Oscar
• 0
4
votes
6
replies
677
views
Positive and negative value fold value in ATAC seq using DiffBind
DiffBind
ATACSeq
7 months ago
Chris
• 0
0
votes
1
reply
373
views
Plotting read densities from DiffBind results
Read
density
DiffBind
updated 7 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
bhandary.8590
• 0
0
votes
2
replies
510
views
Question regarding multiple comparisons in DiffBind
DiffBind
8 months ago • updated 7 months ago
epipally
• 0
8
votes
13
replies
1.8k
views
Help with Error in DiffBind
DiffBind
ATACSeq
8 months ago
Chris
• 0
0
votes
2
replies
592
views
Multiple issues reading in peak sets with Diffbind
DiffBind
updated 8 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
os306
• 0
0
votes
2
replies
727
views
DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2
ChIPSeq
DiffBind
edgeR
HistoneModification
8 months ago
Giulia
• 0
0
votes
0
replies
300
views
DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
DESeq2
ChIPSeq
DiffBind
edgeR
HistoneModification
8 months ago
Giulia
• 0
1
vote
3
replies
431
views
Using DiffBind Normalization and Contrasting on Fold Change Values
DiffBind
updated 8 months ago by
Rory Stark
★ 5.1k • written 8 months ago by
ssankar3
• 0
1
vote
2
replies
405
views
DiffBind spike-in lib.sizes confusion
SpikeIn
DiffBind
9 months ago • updated 8 months ago
Weisheng
• 0
0
votes
13
replies
1.1k
views
Does DiffBind make consensus peaks sets for samples from a given condition (e.g. case control)?
dba.analyze
DiffBind
@rory-stark-5741
8 months ago
tahir.msajid
• 0
0
votes
1
reply
337
views
DiffBind---peak region reads or all reads?
DiffBind
updated 8 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
skyyks123
• 0
0
votes
0
replies
272
views
Can I use default parameter settings of DiffBind to analyze m6A-seq data?
DiffBind
MeRIP-seq
m6A-seq
9 months ago
zhiyi
• 0
0
votes
1
reply
538
views
DiffBind differential analysis
DifferentialPeakCalling
ChIPanalyser
DiffBind
chipseqDB
updated 9 months ago by
Rory Stark
★ 5.1k • written 9 months ago by
narzouni
• 0
50 results • Page
1 of 1
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