Bioconductor IsotopicLabelling

Showing : IsotopicLabelling • reset

0

votes

1

reply

2.3k

views

mzR IsotopicLabelling

updated 4.1 years ago by Laurent Gatto 1.6k • written 4.1 years ago by holly.douglas • 0

1 result • Page 1 of 1

Recent ...

Replies

Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k

> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Votes

Answer: DESeq Input from Salmon + tximport/tximeta

Awards • All

Popular Question to Assa Yeroslaviz ★ 1.5k