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LEA
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606
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LEA get Q-matrix from best snmf() run
LEA
23 months ago
janis
• 0
0
votes
0
replies
572
views
LEA package (3.6.0): tracy-widom test problems
tracy-widom
PCA
LEA
2.2 years ago
Bruna
• 0
0
votes
0
replies
556
views
Zeros in p values in snmf analysis from LEA packge
LEA
snmf
2.3 years ago
Hanan
• 0
0
votes
3
replies
2.3k
views
internal error in trio library when trying to use lfmm() in LEA package
lfmm
LEA
updated 5 weeks ago by
m.charters
• 0 • written 3.0 years ago by
valentinarov
• 0
0
votes
1
reply
1.7k
views
R aborts when attempting to use snmf function in LEA package
snmf
lea
updated 6.8 years ago by
olivier.francois
• 0 • written 6.8 years ago by
renee.catullo
• 0
0
votes
2
replies
2.4k
views
Tutorial:
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA
lfmm
Tutorial
updated 7.0 years ago by
eric.frichot
• 0 • written 7.0 years ago by
afreedman405
• 0
6 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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