Bioconductor LFCShrinkage

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RNAseq lfcShrinkage DESeq2

updated 2.4 years ago by ATpoint ★ 4.5k • written 2.4 years ago by m.lorgen.06 • 0

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Ashr LFCShrinkage IHW DESeq2

2.9 years ago Bex • 0

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lfcshrinkage DESeq2

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by nico • 0

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom by James W. MacDonald 67k

This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

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Answer: ANOVA like approach of edgeR

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