Bioconductor M1

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DESeq2 m1 macbook genefilter

3.1 years ago • updated 22 months ago soda ▴ 80

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apple m1 installation silicon

updated 2.7 years ago by Gordon Smyth 51k • written 3.2 years ago by Brian ▴ 90

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RStudio R M1 BiocParallel Mac

updated 20 months ago by Christian Mertes • 0 • written 22 months ago by me.achleitner • 0

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Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl by James W. MacDonald 67k

Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.

Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl by bioinformata • 0

Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …

Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20

Gordon, I found out what went wrong. The problem was that the xquartz distribution for mac from cran did not include tcltk! I found that b…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k

Hi James, I am likely missing something obvious, but why is the code that I used returning a different number of genes having a GOALL-BP a…

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Answer: object 'hdac_targets' not found

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