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deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 13 months ago by
Basti
▴ 780 • written 13 months ago by
jd
• 0
0
votes
3
replies
1.1k
views
Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 2.3 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
0
votes
3
replies
1.0k
views
Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
mpuli011
• 0
1
vote
2
replies
780
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
julia.chariker
▴ 10
0
votes
3
replies
1.0k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
gaio.transposon
• 0
4
votes
7
replies
1.2k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
jcalis
▴ 10
1
vote
1
reply
2.5k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
Mauve
• 0
4
votes
5
replies
1.8k
views
edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
9.3 years ago
Mauve
• 0
8 results • Page
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Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
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