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Oryza_sativa
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pathview - a species in KEGG pathway but not in 'korg'
pathview
KEGG
Oryza_sativa
3 months ago
Jiyoung Lee
• 0
0
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0
replies
516
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Does EnrichmentBrowser package support analysis of RNA-seq data from Oryza sativa (rice)?
EnrichmentBrowser
Oryza_sativa
2.2 years ago
sjw
• 0
1
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5
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960
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install Annotation Packages BSgenome.Osativa.MSU.MSU7 failed
Oryza_sativa
AnnotationDbi
updated 2.5 years ago by
Hervé Pagès
16k • written 2.5 years ago by
耀宇
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Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message
by
hanna.g
• 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Comment: Doubts regarding Pathview
by
loyedbend2811
• 0
I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …
Comment: ukb Chromosomal position information was converted into SNPS
by
wenbo
• 0
Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs
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A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
Answer: Differential expression analysis with only FPKM matrix available from total newb
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