Showing : Polyester • reset
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Using Polyester to simulate large number of reads from a large transcriptome
polyester rnaseq
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
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1.4k
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polyester: adding noise to RNASeq counts?
rnaseq polyester
updated 7.8 years ago by ▴ 210 • written 7.8 years ago by • 0
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2
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1.4k
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 6.4 years ago by ▴ 210 • written 6.4 years ago by • 0
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1
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419
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polyester biases
polyester
updated 11 months ago by 41k • written 12 months ago by ▴ 10
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2
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1.5k
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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 70
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Polyester's simulate_experiment man pages / vignette description
polyester
4.5 years ago Michael Love 41k
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Polyester - simulate_experiment_countmat with gtf
polyester
4.0 years ago liorglic ▴ 10
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1.1k
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
6.7 years ago sseo2 • 0
0
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1
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672
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Error message
polyester
updated 3.2 years ago by 3.8k • written 3.2 years ago by • 0
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polyester running question
polyester
17 months ago Seongwoo Han ▴ 10
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553
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Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester dispersion
updated 3.0 years ago by 41k • written 3.1 years ago by • 0
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
6.4 years ago fa.gholizadeh89 • 0
12 results • Page 1 of 1
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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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Popular Question to junhui.li11 • 0
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
Centurion to Chris • 0
Commentator to Leonard Goldstein ▴ 200
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