updated 3.3 years ago by
Martin Morgan
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written 3.3 years ago by
Jens Preussner
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Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset
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Michael Love
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The above sounds fine to me.
I do not recommend adding 1 to all expected counts for DESeq2.
It is strange that every gene contains a …
Answer: Swish direction of comparison based on order of factors
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Michael Love
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hi Jean,
Thanks for the question, this wasn't explicitly stated in the documentation, so I've updated it, here are the new sections in m…
Answer: Combining two groups in contrast deseq2
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Michael Love
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There are some examples in `?results`. It sounds like you want a numeric contrast.
Comment: Gradient dotplot
by
sophieagger
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0
That's smart, I'm a bit worried that it'll break my computer if I get enough levels in there to make me happy, but I'll give it a try.
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
by
Field -Ye
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0
Hi Professor Smyth,
Thank you very much for the code. That has solved my problem. All the best.
Field
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