updated 3.9 years ago by
Martin Morgan
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written 3.9 years ago by
Jens Preussner
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Answer: Using featureCounts and downloading Rsubread
by
James W. MacDonald
59k
You need to tell `BiocManager;;install` that you want to install the `Rsubread` package.
```
BiocManager::install("Rsubread")
library(…
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
•
0
Dear ATpoint
I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count
feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
by
James W. MacDonald
59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though.
```
> z <- makeTxDb…
Comment: Handling of missing values in limma
by
AyHi
•
0
Thank you, Gordon, for your reply.
I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
•
0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
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