Bioconductor RNASeqData

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BatchEffect RNASeqData WGCNA DESeq2

updated 22 days ago by Ashley • 0 • written 11 months ago by zxc741xb • 0

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RNASeqData edgeR

updated 7 days ago by Gordon Smyth 50k • written 7 days ago by z_bahari • 0

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SingleCell RNASeq RNASeqData scRNAseq

updated 22 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

3 results • Page 1 of 1

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Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

Comment: Log-cpm values from limma by Gordon Smyth 50k

No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…

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Comment: deseq2 results

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