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ROPLS
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4
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1.8k
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Error in ROPLS with LPS-DA
ROPLS
LPS-DA
6.2 years ago
abigailrandall85
• 0
0
votes
4
replies
1.0k
views
predict.opls() doesn't work when Y is a matrix
ropls
updated 5.9 years ago by
etienne.thevenot
▴ 40 • written 5.9 years ago by
scottericr
• 0
0
votes
4
replies
1.4k
views
HOW to define the "parLabVc" indices in ropls package.
R
ropls
updated 6.0 years ago by
etienne.thevenot
▴ 40 • written 6.0 years ago by
yuan.guo001
• 0
0
votes
1
reply
865
views
ropls package: Recreating scores calculation from an OPLS-DA model
ropls
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
tor.demmers
• 0
1
vote
1
reply
2.7k
views
create S-plots with ropls package
s-plot
ropls
opls-da
rna-seq
updated 2.8 years ago by
Nathalie
▴ 10 • written 3.9 years ago by
andreia
▴ 10
0
votes
1
reply
992
views
How to make OPLS-DA variable importance plot
crlmm
ropls
Metabolomics
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
Charlotte
• 0
5
votes
1
reply
3.2k
views
Data arrangement for PLSDA using the ropls R-package
plsda
ropls
updated 6.7 years ago by
etienne.thevenot
▴ 40 • written 6.7 years ago by
michael.eisenring
▴ 10
0
votes
1
reply
4.9k
views
problem with ropls library (OPLS-DA)
ropls
updated 7.9 years ago by
etienne.thevenot
▴ 40 • written 7.9 years ago by
dominik.guggisberg
• 0
0
votes
1
reply
1.6k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 2.8 years ago by
etienne.thevenot
▴ 40 • written 2.8 years ago by
Fernando
• 0
0
votes
1
reply
592
views
What does it mean when the permI set to different values give the same result
Metabolomics
ropls
updated 17 months ago by
etienne.thevenot
▴ 40 • written 17 months ago by
ansari.maya022
• 0
0
votes
2
replies
734
views
Error received in ropls package
Metabolomics
ropls
updated 18 months ago by
etienne.thevenot
▴ 40 • written 18 months ago by
ansari.maya022
• 0
0
votes
1
reply
1.1k
views
Error with ropls when using oplsda: Error in svd(wwMN) : infinite or missing values in 'x'
ropls
22 months ago
g0079
• 0
0
votes
0
replies
640
views
Orthogonal PLS Regression for multiple response?
ropls
3.8 years ago
guido.guberman
• 0
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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