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ropls
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Error with ropls when using oplsda: Error in svd(wwMN) : infinite or missing values in 'x'
ropls
5 weeks ago
g0079
• 0
1
vote
1
reply
908
views
create S-plots with ropls package
s-plot
ropls
opls-da
rna-seq
updated 12 months ago by
Nathalie
▴ 10 • written 2.1 years ago by
andreia
• 0
0
votes
1
reply
340
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 12 months ago by
etienne.thevenot
▴ 20 • written 12 months ago by
Fernando
• 0
0
votes
0
replies
266
views
Orthogonal PLS Regression for multiple response?
ropls
24 months ago
guido.guberman
• 0
0
votes
1
reply
309
views
ropls package: Recreating scores calculation from an OPLS-DA model
ropls
updated 2.1 years ago by
Kevin Blighe
3.6k • written 2.1 years ago by
tor.demmers
• 0
0
votes
4
replies
500
views
predict.opls() doesn't work when Y is a matrix
ropls
updated 4.2 years ago by
etienne.thevenot
▴ 20 • written 4.2 years ago by
scottericr
• 0
0
votes
4
replies
657
views
HOW to define the "parLabVc" indices in ropls package.
R
ropls
updated 4.3 years ago by
etienne.thevenot
▴ 20 • written 4.3 years ago by
yuan.guo001
• 0
0
votes
4
replies
940
views
Error in ROPLS with LPS-DA
ROPLS
LPS-DA
4.4 years ago
abigailrandall85
• 0
2
votes
1
reply
1.6k
views
Data arrangement for PLSDA using the ropls R-package
plsda
ropls
updated 4.9 years ago by
etienne.thevenot
▴ 20 • written 4.9 years ago by
michael.eisenring
• 0
0
votes
1
reply
2.5k
views
problem with ropls library (OPLS-DA)
ropls
updated 6.1 years ago by
etienne.thevenot
▴ 20 • written 6.1 years ago by
dominik.guggisberg
• 0
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Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc
by
Michael Love
37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot
by
Michael Love
37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat
by
Michael Love
37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Comment: Which is the best type of data for correlation or survival analysis
by
Michael Love
37k
VST is the variance stabilizing transformation, and in the code it produces `vsd` a variance stabilized dataset. VST data = `vsd`. > can I…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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