Bioconductor ROntoTools

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KEGGREST ROntoTools KEGG KEGGgraph

2.3 years ago abf ▴ 30

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ROntoTools Rstudio bioconductor administratorIssues pathway analysis

9.2 years ago svlachavas ▴ 840

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Pathways ROntoTools Pathways ROntoTools

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Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools

updated 11.2 years ago by Paul Shannon ▴ 470 • written 11.2 years ago by enricoferrero ▴ 660

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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k

Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…

Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0

Thank you, so much, for this reply!

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10

That indeed worked, thanks a lot for the help (and for karyoploteR)

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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome

Answer: Epic v2 Annotation CpG_maf source?

Answer: bioconductor packages on bioconda

Filtering low variance genes for WGCNA

A: Filtering low variance genes for WGCNA

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