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RRBSdata
•
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2
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Locating nearest genes in RRBS analysis
hiAnnotator
bsseq
DifferentialMethylation
edgeR
RRBSdata
2.0 years ago • updated 23 months ago
Mageiros
• 0
0
votes
3
replies
350
views
EdgeR for methylation analysis when there is no replicates
RRBSdata
edgeR
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
annasoudi
• 0
0
votes
1
reply
942
views
Differential methilation analysis batch effect removal
BatchEffect
combat
sva
edgeR
RRBSdata
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Mageiros
• 0
0
votes
11
replies
1.6k
views
Differential methilation analysis - Design matrix not of full rank
DifferentialMethylation
RRBSdata
edgeR
updated 2.0 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Mageiros
• 0
1
vote
2
replies
594
views
edgeR, RRBS Library size preparation
RRBSdata
edgeR
methylationArrayAnalysis
10 months ago
Krzysztof
• 0
5 results • Page
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Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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