Bioconductor RUVr

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edger RUVseq RUVr GLM RNAseq

5.7 years ago garbuzov • 0

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RUV ruvseq ruvr ruvnormalize single cell

7.6 years ago Nik Tuzov ▴ 90

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rnaseq ruvseq RUVr edgeR

9.3 years ago • updated 9.2 years ago David R ▴ 90

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Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k

recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?

Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0

Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!

Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0

Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…

Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k

It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…

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A: WGCNA sample size minimum: why?

WGCNA sample size minimum: why?

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