Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RUV
•
reset
0
votes
1
reply
212
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 15 days ago by
Michael Love
42k • written 19 days ago by
Ειρήνη
• 0
1
vote
2
replies
1.5k
views
RUV4 for microarrays
RUV4
RUV
Microarray
3.2 years ago
Antonio
• 0
5
votes
6
replies
1.7k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.8 years ago by
James W. MacDonald
66k • written 3.8 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.7k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.3 years ago by
hermidalc
▴ 20 • written 5.0 years ago by
raf4
▴ 20
0
votes
3
replies
1.0k
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.4 years ago by
tmms
• 0 • written 4.4 years ago by
f_pardow
• 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
r.tom
• 0
0
votes
0
replies
971
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.9 years ago
peter.fransquet
• 0
0
votes
0
replies
973
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.2 years ago
RC
• 0
0
votes
0
replies
983
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.2 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.7k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.0 years ago by
davide risso
▴ 950 • written 7.0 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.4k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.0 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
960
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
7.1 years ago
manish20072013
• 0
3
votes
4
replies
3.3k
views
Single cells batch effects
RUV
single cell
batch effect
7.3 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.0k
views
Has anyone used the RUV package for Microbiome data?
ruv
7.4 years ago
sasha
• 0
0
votes
1
reply
2.4k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.5 years ago by
davide risso
▴ 950 • written 7.6 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.6 years ago
carleshf
▴ 10
2
votes
1
reply
1.6k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.0 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.4k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
9.0 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.7k
views
normalised data after RUV2( )
ruv
microarray
updated 9.0 years ago by
gthm
▴ 30 • written 9.2 years ago by
Pauly Lin
▴ 160
3
votes
2
replies
2.7k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 9.2 years ago by
davide risso
▴ 950 • written 9.2 years ago by
Pauly Lin
▴ 160
1
vote
9
replies
2.7k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.2 years ago
sergio.espeso-gil
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
United States,
11 minutes ago
France,
16 minutes ago
United States,
19 minutes ago
WEHI, Melbourne, Australia,
38 minutes ago
United States,
40 minutes ago
Traffic: 685 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6