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RUV
•
reset
1
vote
2
replies
667
views
RUV4 for microarrays
RUV4
RUV
Microarray
21 months ago
Antonio
• 0
5
votes
6
replies
915
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 2.4 years ago by
James W. MacDonald
62k • written 2.4 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.0k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 2.8 years ago by
hermidalc
▴ 10 • written 3.5 years ago by
raf4
▴ 20
0
votes
3
replies
501
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 2.9 years ago by
tmms
• 0 • written 3.0 years ago by
f_pardow
• 0
0
votes
1
reply
692
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 3.3 years ago by
Michael Love
39k • written 3.3 years ago by
r.tom
• 0
0
votes
0
replies
531
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
4.4 years ago
peter.fransquet
• 0
0
votes
0
replies
545
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
4.7 years ago
RC
• 0
0
votes
0
replies
507
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
4.7 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
1.9k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 5.5 years ago by
davide risso
▴ 920 • written 5.5 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
1.6k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
5.5 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
656
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
5.6 years ago
manish20072013
• 0
3
votes
4
replies
2.6k
views
Single cells batch effects
RUV
single cell
batch effect
5.8 years ago
ribioinfo
▴ 100
0
votes
0
replies
722
views
Has anyone used the RUV package for Microbiome data?
ruv
5.9 years ago
sasha
• 0
0
votes
1
reply
1.8k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 6.0 years ago by
davide risso
▴ 920 • written 6.1 years ago by
weiwsmiling
• 0
0
votes
0
replies
769
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
6.1 years ago
carleshf
▴ 10
2
votes
1
reply
1.1k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
6.6 years ago
anthonycolombo60
• 0
0
votes
5
replies
1.7k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
7.5 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.3k
views
normalised data after RUV2( )
ruv
microarray
updated 7.6 years ago by
gthm
▴ 20 • written 7.7 years ago by
Pauly Lin
▴ 130
3
votes
2
replies
2.1k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 7.7 years ago by
davide risso
▴ 920 • written 7.7 years ago by
Pauly Lin
▴ 130
1
vote
9
replies
1.8k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
7.7 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
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Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
jeffbrick852
• 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs
by
James W. MacDonald
62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards
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Scholar
to
James W. MacDonald
62k
Commentator
to
vs2001
▴ 30
Scholar
to
Mike Smith
★ 5.9k
Popular Question
to
shepherl
3.4k
Scholar
to
Gordon Smyth
47k
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