Showing : Rsubread • reset
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Rsubread package usage and speed questions
Alignment Rsubread Alignment Rsubread
13.4 years ago Davis, Wade ▴ 350
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3.9k
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voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization GO graph Rsubread Normalization GO graph Rsubread
updated 13.4 years ago by 53k • written 13.4 years ago by ★ 4.2k
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build/check reports for ENVISIONQuery, IdMappingRetrieval on OSX
Cancer RWebServices SJava CoGAPS CRImage Rsubread Cancer RWebServices SJava CoGAPS
13.5 years ago Day, Roger S ▴ 60
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2.8k
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Rsubread/Rsamtools mappings outside of chromosome ranges
PROcess Rsamtools Rsubread TCC PROcess Rsamtools Rsubread TCC
13.7 years ago Thomas Girke ★ 1.7k
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Rsubread installation failed.
Rsubread BiocInstaller
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 230
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Rsubread package not available? Warning resolved
affxparser Rsubread BiocInstaller affxparser Rsubread BiocInstaller
updated 13.9 years ago by ★ 3.6k • written 13.9 years ago by ▴ 20
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Regarding subread vignette
Sequencing Alignment Rsubread Sequencing Alignment Rsubread
14.1 years ago Wei Shi ★ 3.6k
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Rsubread alingner
Alignment Yeast Rsubread Alignment Yeast Rsubread
14.5 years ago Wei Shi ★ 3.6k
208 results • Page 5 of 5
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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