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Rsubread
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Rsubread package usage and speed questions
Alignment
Rsubread
Alignment
Rsubread
13.4 years ago
Davis, Wade
▴ 350
0
votes
4
replies
3.9k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization
GO
graph
Rsubread
Normalization
GO
graph
Rsubread
updated 13.4 years ago by
Gordon Smyth
53k • written 13.4 years ago by
Tim Triche
★ 4.2k
0
votes
0
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1.4k
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build/check reports for ENVISIONQuery, IdMappingRetrieval on OSX
Cancer
RWebServices
SJava
CoGAPS
CRImage
Rsubread
Cancer
RWebServices
SJava
CoGAPS
13.5 years ago
Day, Roger S
▴ 60
0
votes
11
replies
2.8k
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Rsubread/Rsamtools mappings outside of chromosome ranges
PROcess
Rsamtools
Rsubread
TCC
PROcess
Rsamtools
Rsubread
TCC
13.7 years ago
Thomas Girke
★ 1.7k
0
votes
3
replies
2.5k
views
Rsubread installation failed.
Rsubread
BiocInstaller
updated 13.7 years ago by
Gordon Smyth
53k • written 13.7 years ago by
Sang Chul Choi
▴ 230
1
vote
10
replies
6.1k
views
Rsubread package not available? Warning resolved
affxparser
Rsubread
BiocInstaller
affxparser
Rsubread
BiocInstaller
updated 13.9 years ago by
Wei Shi
★ 3.6k • written 13.9 years ago by
NDowell
▴ 20
0
votes
1
reply
1.2k
views
Regarding subread vignette
Sequencing
Alignment
Rsubread
Sequencing
Alignment
Rsubread
14.1 years ago
Wei Shi
★ 3.6k
0
votes
8
replies
2.6k
views
Rsubread alingner
Alignment
Yeast
Rsubread
Alignment
Yeast
Rsubread
14.5 years ago
Wei Shi
★ 3.6k
208 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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